Eric Barth

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Publications

[13] Barth, E., "Composing" , "Harmonics", "Scales", "Geometry of Music", "Wind Instruments", "Percussion Instruments", in Encyclopedia of Mathematics and Society, Sarah Greenwald and Jill Thomley, editors, Salem Press, (2011)

[12] Cardenas, A., and Barth, E., Extending the timescale in atomically detailed simulations (pdf), Reviews in Computational Chemistry, Kenny B. Lipkowitz and Thomas R. Cundari, Eds., VCH Publishers, New York, Vol. 26, pp. 367--420, (2008)

[11] Barth, E., Leimkuhler, B., and Sweet, C.R. Approach to Thermal Equilibrium in Biomolecular Simulation (pdf), Lecture Notes in Computational Science and Engineering Volume 49, pp. 125--139 (2006)
click to see the abstract

[10] Barth, E., Laird, B., Leimkuhler, B., Generating Generalized Distributions from Dynamical Simulation (postscipt), Journal of Chemical Physics, 118: 5957--5968 (2003)
click to see the abstract

[9] Barth, E., Leimkuhler, B. and Reich, S., A Test Set for Molecular Dynamics (pdf) Lecture Notes in Computational Science and Engineering, Vol. 24, 73-103, 2002
click to see the abstract

[8] P. Benner, R. Byers and E. Barth, HAMEV and SQRED: Fortran 77 Subroutines for Computing the Eigenvalues of Hamiltonian Matrices Using VanLoan's Square Reduced Method (postscript)
ACM Transactions on Mathematical Software, Volume 26, Number 1 (2000)
click to see the abstract

[7] E. Barth, B. Leimkuhler and S. Reich A Semi-Explicit, Time-Reversible, Variable-Stepsize Integrator for Constrained Dynamics (postscript)
SIAM Journal on Scientific Computing, Volume 21, Number 3, pp. 1027-1044 (1999)
click to see the abstract

[6] E. Barth and T. Schlick Overcoming Stability Limitations in Biomolecular Dynamics:
Combining Force Splitting via Extrapolation with Langevin Dynamics in LN (pdf)
,
Journal of Chemical Physics 109: 1617-1632 (1998)
click to see the abstract

[5] E. Barth and T. Schlick, Extrapolation versus Impulse in Multiple-Timestepping Schemes: Linear Analysis and Applications to Newtonian and Langevin Dynamics (pdf) , Journal of Chemical Physics 109: 1633-1642 (1998)
click to see the abstract

[4] T. Schlick, E. Barth and M. Mandziuk, Biomolecular Dynamics at Long Timesteps: Bridging the Timescale Gap Between Simulation and Experimentation (pdf) , in Annual Review of Biophysics and Biomolecular Structure, Volume 26, pp 179--220, Robert M. Stroud, Editor (1997).
click to see the abstract

[3] E. Barth and B. Leimkuhler, Symplectic Methods for Conservative Multibody Systems (postscript),
in Integration Algorithms for Classical Mechanics, Fields Institute Communications, vol. 10, pp. 25-43, American Mathematical Society (1996)
click to see the abstract

[2] E. Barth, M. Mandziuk and T. Schlick, A Separating Framework for Increasing the Timestep in Molecular Dynamics
in Computer Simulation of Biomolecular Systems: Theoretical and Experimental Applications, Volume 3, W.F. van Gunsteren, P.K. Weiner and A. J. Wilkinson, Editors, ESCOM, Leiden, The Netherlands, (1996).
click to see the abstract

[1] E. Barth, K. Kuczera, B. Leimkuhler, and R.D. Skeel
Algorithms for Constrained Molecular Dynamics (pdf),
Journal of Computational Chemistry, 16:1192-1209 (1995).
click to see the abstract


barth@kzoo.edu